wormbase-pipeline

lp:wormbase-pipeline

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  2. lp:wormbase-pipeline
Owned by elpaule
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git clone https://git.launchpad.net/wormbase-pipeline

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Import Status: Reviewed

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Branches

Name Last Modified Last Commit
slurm_WS293 2024-05-20 18:21:40 UTC
Prepend date for logging

Author: Mark Quinton-Tulloch
Author Date: 2024-05-20 18:21:40 UTC

Prepend date for logging
master 2024-05-16 09:58:05 UTC
Update release number WS293

Author: Stavros Diamantakis
Author Date: 2024-05-16 09:58:05 UTC

Update release number WS293
slurm 2024-05-14 12:41:41 UTC
WormSlurm and slurm_submit tweaks

Author: Mark Quinton-Tulloch
Author Date: 2024-05-14 12:41:41 UTC

WormSlurm and slurm_submit tweaks
omim_update 2024-04-30 10:40:40 UTC
Merge branch 'master' into omim_update

Author: Mark Quinton-Tulloch
Author Date: 2024-04-30 10:40:40 UTC

Merge branch 'master' into omim_update
WS292 2024-04-04 09:40:59 UTC
Remove DS_Store

Author: Mark Quinton-Tulloch
Author Date: 2024-04-04 09:40:59 UTC

Remove DS_Store
NS-1.7.0-API-token-instructions-update 2024-01-11 19:17:08 UTC
Fixed Unauthorized NS calling reporting

Author: Manuel Luypaert
Author Date: 2024-01-11 19:17:08 UTC

Fixed Unauthorized NS calling reporting
WBPS19 2024-01-10 17:12:05 UTC
WBPS19

Author: Dionysios Grigoriadis
Author Date: 2024-01-10 17:12:05 UTC

WBPS19
nextflow 2024-01-09 09:56:45 UTC
Rename busco.nf to wbps_genome_statistics.nf

Author: Dionysios Grigoriadis
Author Date: 2024-01-09 09:56:45 UTC

Rename busco.nf to wbps_genome_statistics.nf
filedumps 2023-11-29 11:37:38 UTC
Update DumpCoreDatabases_conf.pm

Author: steph-brown28
Author Date: 2023-11-29 11:37:38 UTC

Update DumpCoreDatabases_conf.pm
string 2023-11-29 10:26:40 UTC
modifying string script so it matche based on

Author: steph-brown28
Author Date: 2023-11-29 10:26:40 UTC

modifying string script so it matche based on
uniparc identifiers
WS291 2023-11-14 14:48:53 UTC
Fix loading of pfamseq table

Author: Mark Quinton-Tulloch
Author Date: 2023-11-14 14:48:53 UTC

Fix loading of pfamseq table
preprocessing19 2023-10-16 08:48:39 UTC
Merge branch 'preprocessing19' of https://github.com/wormbase/wormbase-pipeli...

Author: steph-brown28
Author Date: 2023-10-16 08:48:39 UTC

Merge branch 'preprocessing19' of https://github.com/wormbase/wormbase-pipeline into preprocessing19
WS290 2023-09-18 10:30:46 UTC
Add human asserted genes to DA submission

Author: markquintontulloch
Author Date: 2023-09-18 10:30:46 UTC

Add human asserted genes to DA submission
WS289 2023-06-07 14:26:43 UTC
Use datamover queue to copy xref file and create symlink

Author: Mark Quinton-Tulloch
Author Date: 2023-06-07 14:26:43 UTC

Use datamover queue to copy xref file and create symlink
Ppa_V3 2023-03-24 10:57:08 UTC
Fix case of Ppa_v3

Author: Mark Quinton-Tulloch
Author Date: 2023-03-24 10:57:08 UTC

Fix case of Ppa_v3
WS288 2023-03-07 23:00:15 UTC
Fix missing inferred gene annotations

Author: Mark Quinton-Tulloch
Author Date: 2023-03-07 23:00:15 UTC

Fix missing inferred gene annotations
WS287 2022-12-09 15:58:52 UTC
Switch Inferred_gene to Asserted_gene

Author: Mark Quinton-Tulloch
Author Date: 2022-12-09 15:58:52 UTC

Switch Inferred_gene to Asserted_gene
WBPS18.pre-processing 2022-12-09 14:03:43 UTC
Merge branch 'WBPS18.pre-processing' of https://github.com/WormBase/wormbase-...

Author: Matej Vucak
Author Date: 2022-12-09 14:03:43 UTC

Merge branch 'WBPS18.pre-processing' of https://github.com/WormBase/wormbase-pipeline into WBPS18.pre-processing
BioLink_markup 2022-11-01 14:47:33 UTC
Update models.wrm

Author: Stavros Diamantakis
Author Date: 2022-11-01 14:47:33 UTC

Update models.wrm
WS286 2022-09-22 09:25:30 UTC
Merge branch 'WS286' of https://github.com/WormBase/wormbase-pipeline into WS286

Author: Mark Quinton-Tulloch
Author Date: 2022-09-22 09:25:30 UTC

Merge branch 'WS286' of https://github.com/WormBase/wormbase-pipeline into WS286
WS285 2022-06-15 18:14:16 UTC
Use backup file for blast count tests

Author: Mark Quinton-Tulloch
Author Date: 2022-06-15 18:14:16 UTC

Use backup file for blast count tests
noah 2022-02-25 10:46:40 UTC
Merge branch 'master' of https://github.com/WormBase/wormbase-pipeline

Author: Mark Quinton-Tulloch
Author Date: 2022-02-25 10:46:40 UTC

Merge branch 'master' of https://github.com/WormBase/wormbase-pipeline
codon 2022-02-25 09:42:24 UTC
Remove temporary script only needed for WS284

Author: Mark Quinton-Tulloch
Author Date: 2022-02-25 09:42:24 UTC

Remove temporary script only needed for WS284
WS284_codon 2022-02-25 09:42:24 UTC
Remove temporary script only needed for WS284

Author: Mark Quinton-Tulloch
Author Date: 2022-02-25 09:42:24 UTC

Remove temporary script only needed for WS284
WB_BioLinkML 2022-02-18 11:10:18 UTC
Create models.wrm

Author: Paul Davis
Author Date: 2022-02-18 11:10:18 UTC

Create models.wrm
WS283 2021-11-01 11:21:08 UTC
Fixed untested code accidentally pushed with the last commit, now possible to...

Author: Paul-Davis
Author Date: 2021-11-01 11:21:08 UTC

Fixed untested code accidentally pushed with the last commit, now possible to specify Hinxton or Hinxton curated classes instead of all, requested to do stats between releases/dbs.
smelegans 2021-10-20 11:00:55 UTC
Merge branch 'master' into smelegans

Author: MagdalenaZZ
Author Date: 2021-10-20 11:00:55 UTC

Merge branch 'master' into smelegans
WS282 2021-09-14 10:04:57 UTC
Added warning message

Author: MagdalenaZZ
Author Date: 2021-09-14 10:04:57 UTC

Added warning message
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